PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00803g00313.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family M-type_MADS
Protein Properties Length: 165aa    MW: 18503.3 Da    PI: 8.4868
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00803g00313.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF27.93.1e-0913411240
                              HHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
                    SRF-TF 12 tfskRrngilKKAeELSvLCdaevaviif 40
                               ++  +n++  KA ELS+LC++++a+iif
  Peaxi162Scf00803g00313.1 13 ALTHMQNTLCTKAMELSILCGIKIAIIIF 41
                              5666689********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500669.769154IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.06E-11370IPR002100Transcription factor, MADS-box
PfamPF003195.6E-71842IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MRLTRDKHSQ DAALTHMQNT LCTKAMELSI LCGIKIAIII FRLGDQPVLY GNSNIESVVN  60
KFLKSQLTKC LSCRYMLCEW ASCREERCKM TEKGKELQAN DENQNHLNQK IDKFSKYLNN  120
KIILLQSAIG ADNSNSSEEM NITGLKDPKS ISEKSVASAS TVSPN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22971258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.12e-09AGAMOUS-like 29